CGView.js

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Anchor
- name
- xPercent
- yPercent
- toJSON
- toString
Annotation
- canvas
- color
- font
- labelLineLength
- layout
- length
- meta
- priorityMax
- sequence
- viewer
- visible
- addLabel
- deleteFromObjects
- invertColors
- labels
- removeLabels
- toJSON
- toString
- update
Backbone
- adjustedCenterOffset
- adjustedThickness
- bpThicknessAddition
- canvas
- centerOffset
- color
- colorAlternate
- decoration
- layout
- maxThickness
- meta
- sequence
- thickness
- viewer
- visible
- visibleRange
- containsCenterOffset
- deleteFromObjects
- maxZoomFactor
- pixelsPerBp
- toJSON
- toString
- update
Bookmark
- bp
- canvas
- favorite
- format
- layout
- meta
- name
- sequence
- shortcut
- viewer
- visible
- zoom
- deleteFromObjects
- moveTo
- remove
- toJSON
- toString
- update
Box
- anchor
- bottom
- bottomPadded
- centerX
- centerY
- height
- left
- leftPadded
- on
- paddedX
- paddedY
- padding
- position
- right
- rightPadded
- top
- topPadded
- width
- x
- y
- clear
- containsPt
- toString
Canvas
- cursor
- height
- layerNames
- layout
- pixelRatio
- sequence
- viewer
- width
- clear
- resize
Caption
- anchor
- backgroundColor
- canvas
- font
- fontColor
- layout
- meta
- name
- on
- onCanvas
- onMap
- position
- sequence
- textAlignment
- viewer
- visible
- clear
- deleteFromObjects
- draw
- highlight
- invertColors
- move
- moveTo
- remove
- toJSON
- toString
- update
CGArray
- first
- last
- arrayerize
- attr
- each
- empty
- get
- move
- present
- remove
- toString
- unique
CGObject
- canvas
- layout
- meta
- sequence
- viewer
- visible
- deleteFromObjects
- toString
CGRange
- contig
- length
- mapStart
- mapStop
- middle
- sequence
- start
- stop
- containsMapBp
- copy
- getStartPlus
- getStopPlus
- isMapLength
- isWrapped
- mergeWithRange
- normalize
- overHalfMapLength
- overlapsMapRange
CodonTable
- availableGeneticCodeIDs
- definitions
- codons
- geneticCodeID
- name
- starts
- stops
- table
- toString
- translate
CodonTables
- tables
- byID
- names
- translate
Color
- hsv
- opacity
- rgb
- rgba
- rgbaString
- rgbString
- names
- copy
- equals
- invert
- setColor
- toString
Contig
- canvas
- color
- id
- index
- layout
- length
- lengthOffset
- mapRange
- mapStart
- mapStop
- meta
- name
- orientation
- seq
- sequence
- viewer
- visible
- asFasta
- deleteFromObjects
- features
- hasSeq
- move
- moveTo
- remove
- reverseComplement
- toJSON
- toString
- update
Divider
- adjustedSpacing
- adjustedThickness
- canvas
- color
- layout
- meta
- mirror
- name
- sequence
- spacing
- thickness
- viewer
- visible
- deleteFromObjects
- toString
- update
Dividers
- dividersMirrored
- slot
- track
- invertColors
- toJSON
- toString
EventMonitor
- canvas
- viewer
Events
- off
- on
- trigger
Feature
- canvas
- codonStart
- color
- contig
- decoration
- extractedFromSequence
- favorite
- geneticCode
- label
- layout
- legend
- legendItem
- mapRange
- mapStart
- mapStop
- meta
- name
- range
- score
- seq
- sequence
- start
- stop
- type
- viewer
- visible
- deleteFromObjects
- highlight
- moveTo
- remove
- slots
- toString
- tracks
- translate
- update
Font
- bold
- css
- family
- height
- italic
- size
- string
- style
- toString
- width
Highlighter
- backbone
- canvas
- contig
- feature
- layout
- meta
- plot
- sequence
- viewer
- visible
- deleteFromObjects
- toString
HighlighterElement
- highlighting
- popover
- popoverContents
- type
IO
- viewer
- downloadFasta
- downloadImage
- downloadJSON
- loadJSON
- toJSON
Layout
- backbone
- bbInsideOffset
- bbOutsideOffset
- canvas
- centerInsideOffset
- centerOutsideOffset
- height
- maxSlotThickness
- minSlotThickness
- scale
- sequence
- type
- viewer
- width
LayoutLinear
Legend
- anchor
- backgroundColor
- canvas
- defaultFont
- defaultFontColor
- layout
- meta
- on
- position
- sequence
- textAlignment
- viewer
- visible
- addItems
- clear
- deleteFromObjects
- findLegendItemByName
- findLegendItemOrCreate
- invertColors
- items
- moveItem
- moveTo
- removeItems
- toJSON
- toString
- update
- updateItems
LegendItem
- canvas
- decoration
- drawSwatch
- font
- fontColor
- height
- layout
- legend
- meta
- name
- sequence
- swatchColor
- swatchWidth
- usingDefaultFont
- viewer
- visible
- width
- deleteFromObjects
- features
- highlight
- invertColors
- move
- plots
- remove
- toJSON
- toString
- update
Messenger
- fadeTime
- viewer
- visible
- close
- open
- toString
NCList
- length
- _normalize
- end
- fill
- start
- sublist
Plot
- axisMax
- axisMin
- baseline
- canvas
- color
- extractedFromSequence
- layout
- legend
- legendItem
- legendItemNegative
- legendItemPositive
- legendNegative
- legendPositive
- length
- meta
- name
- positions
- score
- sequence
- type
- viewer
- visible
- deleteFromObjects
- highlight
- remove
- toString
Position
- on
- point
- x
- y
- toString
Rect
- bottom
- height
- left
- right
- top
- width
- x
- y
- containsPt
- overlap
Ruler
- canvas
- color
- layout
- majorTicks
- majorTickStep
- meta
- minorTicks
- minorTickStep
- sequence
- tickFormater
- viewer
- visible
- _createTickFormatter
- deleteFromObjects
- toString
Sequence
- bpMargin
- bpSpacing
- canvas
- color
- font
- hasSeq
- layout
- length
- mapContig
- meta
- seq
- sequence
- sequenceExtractor
- thickness
- viewer
- visible
- complement
- random
- addBp
- addContigs
- asFasta
- bpForContig
- constrain
- contigForBp
- contigs
- contigsForMapRange
- deleteFromObjects
- findPattern
- forRange
- moveContig
- removeContigs
- subtractBp
- toString
- updateContigs
SequenceExtractor
- length
- sequence
- viewer
Settings
- arrowHeadLength
- backgroundColor
- format
- showShading
- toString
Slot
- bbOffset
- canvas
- centerOffset
- inside
- layout
- meta
- outside
- position
- proportionOfMap
- sequence
- thickness
- thicknessRatio
- track
- type
- viewer
- visible
- visibleRange
- containsCenterOffset
- deleteFromObjects
- findFeaturesForBp
- pixelsPerBp
- removeFeatures
- removePlot
- toString
Track
- canvas
- dataKeys
- dataMethod
- dataOptions
- dataType
- id
- itemCount
- layout
- loadProgress
- meta
- name
- plot
- position
- separateFeaturesBy
- sequence
- thicknessRatio
- type
- viewer
- visible
- deleteFromObjects
- features
- removeFeatures
- removePlot
- toString
- uniqueFeatures
Viewer
- annotation
- bbOffset
- bp
- dataHasChanged
- dividers
- events
- format
- geneticCode
- height
- id
- layout
- legend
- loading
- maxDimension
- maxZoomFactor
- minDimension
- minZoomFactor
- name
- scale
- sequence
- width
- zoomFactor
- addBookmarks
- addCaptions
- addFeatures
- addPlots
- addTracks
- bookmarks
- captions
- clear
- contigs
- features
- flash
- invertColors
- moveCaption
- moveLeft
- moveRight
- moveTo
- objects
- off
- on
- plots
- recenterTracks
- recordsWithChangedAttributes
- removeBookmarks
- removeFeatures
- reset
- resize
- slots
- sources
- tracks
- trigger
- updateBookmarks
- updateFeatures
- updatePlots
- updateTracks
- zoomIn
- zoomOut
- zoomTo

Class: LayoutLinear

LayoutLinear

This Layout is in control of handling and drawing the map as a line

new LayoutLinear()

LayoutLinear.js, line 15

Create a Layout

Documentation generated by JSDoc 3.6.4. See API Home for documentation generation date.